PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g13720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 241aa    MW: 27162.8 Da    PI: 4.9314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g13720genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-1788136354
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  Tp4g13720  88 YRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 136
                9*******.**********44465..*********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1187134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2987146IPR001471AP2/ERF domain
PROSITE profilePS5103221.87887145IPR001471AP2/ERF domain
SMARTSM003802.7E-3587151IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2188147IPR016177DNA-binding domain
PRINTSPR003674.0E-108899IPR001471AP2/ERF domain
CDDcd000185.45E-2888146No hitNo description
PRINTSPR003674.0E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEYSQSTMYS SPSSWSSSQE SFMWEESSAL DQSSDHHQYF FDPNHYYSDD FFSFESPEMM  60
IKEETQNGDV SYSEEEEKIG IVDEDRSYRG VRKRPWGKFA AEIRDSTRNG IRVWLGTFDK  120
AEEAALAYDQ AAFATKGSLA ILNFPVEVVR ESLKKMENVN LQDGGSPVMA LKRKHSLRNR  180
PRGKKRSSNS NSSSSSSSSS SSSSSTSRSN KQSIVKQESG TLVVFEDLGA EYLEQLLMSS  240
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2786148163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410255.11e-127hypothetical protein EUTSA_v10017149mg
SwissprotQ8VYM01e-123ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLV4MGN11e-127V4MGN1_EUTSA; Uncharacterized protein
STRINGBra018271.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-104ethylene-responsive element binding factor 15